HL_8B2L_078
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- ACUGAAGAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_078 not in the Motif Atlas
- Homologous match to HL_4V90_033
- Geometric discrepancy: 0.1432
- The information below is about HL_4V90_033
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8B2L|1|W2|A|31
8B2L|1|W2|C|32
8B2L|1|W2|U|33
8B2L|1|W2|G|34
8B2L|1|W2|A|35
8B2L|1|W2|A|36
8B2L|1|W2|G|37
8B2L|1|W2|A|38
8B2L|1|W2|U|39
Current chains
- Chain W2
- tRNA
Nearby chains
- Chain B1
- mRNA
- Chain Y1
- 40S ribosomal protein S15-like
- Chain f1
- 40S ribosomal protein S16
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
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