HL_8B2L_082

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8B2L|1|h1|U|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_082 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.3917

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8B2L|1|h1|G|152
8B2L|1|h1|U|153
8B2L|1|h1|A|154
8B2L|1|h1|A|155
8B2L|1|h1|U|156
8B2L|1|h1|U|157
8B2L|1|h1|C|158

Current chains

Chain h1

18S rRNA

Nearby chains

Chain H1

40S ribosomal protein S24

Chain k1

40S ribosomal protein S6