HL_8B2L_087

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

U(OMU)AGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_087 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.099

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8B2L|1|h1|U|372
8B2L|1|h1|OMU|373
8B2L|1|h1|A|374
8B2L|1|h1|G|375
8B2L|1|h1|G|376
8B2L|1|h1|G|377

Current chains

Chain h1

18S rRNA

Nearby chains

Chain X1

40S ribosomal protein S11-like

Chain b1

40S ribosomal protein S9-2-like

Chain c1

40S ribosomal protein S2-3-like

Chain e1

40S ribosomal protein S15a-1