HL_8B2L_088

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

8B2L|1|h1|C|406, 8B2L|1|h1|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_088 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.0924

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8B2L|1|h1|C|397
8B2L|1|h1|C|398
8B2L|1|h1|U|399
8B2L|1|h1|G|400
8B2L|1|h1|A|401
8B2L|1|h1|G|402
8B2L|1|h1|A|403
8B2L|1|h1|A|404
8B2L|1|h1|A|405
8B2L|1|h1|C|406
8B2L|1|h1|G|407
8B2L|1|h1|G|408

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A1

40S ribosomal protein S4

Chain H1

40S ribosomal protein S24

Chain P1

40S ribosomal protein S8

Chain k1

40S ribosomal protein S6