HL_8B2L_098
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GA(PSU)CAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8B2L|1|h1|C|1003, 8B2L|1|h1|U|1007
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_098 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2504
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8B2L|1|h1|G|1000
8B2L|1|h1|A|1001
8B2L|1|h1|PSU|1002
8B2L|1|h1|C|1003
8B2L|1|h1|A|1004
8B2L|1|h1|G|1005
8B2L|1|h1|A|1006
8B2L|1|h1|U|1007
8B2L|1|h1|A|1008
8B2L|1|h1|C|1009
8B2L|1|h1|C|1010
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain B1
- mRNA
- Chain S1
- 40S ribosomal protein S14-2
- Chain W2
- Transfer RNA; tRNA
Coloring options: