HL_8B2L_100

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_100 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0951

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8B2L|1|h1|A|1087
8B2L|1|h1|G|1088
8B2L|1|h1|A|1089
8B2L|1|h1|A|1090
8B2L|1|h1|A|1091
8B2L|1|h1|U|1092

Current chains

Chain h1

18S rRNA

Nearby chains

Chain J1

40S ribosomal protein S26

Chain c1

40S ribosomal protein S2-3-like

Chain e1

40S ribosomal protein S15a-1