HL_8B2L_102
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8B2L|1|h1|A|1199
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_102 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.1011
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8B2L|1|h1|G|1191
8B2L|1|h1|A|1192
8B2L|1|h1|C|1193
8B2L|1|h1|B8N|1194
8B2L|1|h1|C|1195
8B2L|1|h1|A|1196
8B2L|1|h1|A|1197
8B2L|1|h1|C|1198
8B2L|1|h1|A|1199
8B2L|1|h1|C|1200
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain R1
- 40S ribosomal protein S20-2
- Chain V1
- 40S ribosomal protein S29
- Chain W2
- Transfer RNA; tRNA
- Chain Y1
- 40S ribosomal protein S15-like
- Chain f1
- 40S ribosomal protein S16
- Chain i2
- Transfer RNA; tRNA
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