HL_8B2L_104

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAGCGA(PSU)U

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_104 not in the Motif Atlas

Geometric match to HL_6CZR_215

Geometric discrepancy: 0.3319

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

8B2L|1|h1|G|1298
8B2L|1|h1|A|1299
8B2L|1|h1|G|1300
8B2L|1|h1|C|1301
8B2L|1|h1|G|1302
8B2L|1|h1|A|1303
8B2L|1|h1|PSU|1304
8B2L|1|h1|U|1305

Current chains

Chain h1

18S rRNA

Nearby chains

Chain G1

40S ribosomal protein S21

Chain Z1

40S ribosomal protein SA

Chain c1

40S ribosomal protein S2-3-like