HL_8B2L_111

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

G(PSU)G(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

8B2L|1|h1|G|1788

QA status

Modified nucleotides: PSU, MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_111 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.351

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8B2L|1|h1|G|1786
8B2L|1|h1|PSU|1787
8B2L|1|h1|G|1788
8B2L|1|h1|MA6|1789
8B2L|1|h1|MA6|1790
8B2L|1|h1|C|1791

Current chains

Chain h1

18S rRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain p3

60S ribosomal protein L41