HL_8B2L_112

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

8B2L|1|i2|U|17, 8B2L|1|i2|G|18, 8B2L|1|i2|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_112 not in the Motif Atlas

Homologous match to HL_5HR6_001

Geometric discrepancy: 0.4803

The information below is about HL_5HR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8B2L|1|i2|C|13
8B2L|1|i2|A|14
8B2L|1|i2|G|15
8B2L|1|i2|U|16
8B2L|1|i2|U|17
8B2L|1|i2|G|18
8B2L|1|i2|G|19
8B2L|1|i2|G|20
8B2L|1|i2|A|21
8B2L|1|i2|G|22

Current chains

Chain i2

tRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain t3

uL5 (60S ribosomal protein L11)