HL_8B2L_114

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_114 not in the Motif Atlas

Homologous match to HL_6UGG_006

Geometric discrepancy: 0.084

The information below is about HL_6UGG_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

8B2L|1|i2|G|53
8B2L|1|i2|U|54
8B2L|1|i2|U|55
8B2L|1|i2|C|56
8B2L|1|i2|G|57
8B2L|1|i2|A|58
8B2L|1|i2|U|59
8B2L|1|i2|C|60
8B2L|1|i2|C|61

Current chains

Chain i2

tRNA

Nearby chains

Chain A3

Large subunit ribosomal RNA; LSU rRNA

Chain g3

uL16 (60S ribosomal protein L10)