HL_8B2L_116

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

8B2L|1|A3|C|659

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_116 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0624

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8B2L|1|A3|U|651
8B2L|1|A3|C|652
8B2L|1|A3|U|653
8B2L|1|A3|U|654
8B2L|1|A3|G|655
8B2L|1|A3|1MA|656
8B2L|1|A3|A|657
8B2L|1|A3|A|658
8B2L|1|A3|C|659
8B2L|1|A3|A2M|660

Current chains

Chain A3

25S rRNA

Nearby chains

Chain R3

60S ribosomal protein L32-1

Chain f3

uL15 (60S ribosomal protein L27a)

Chain r3

uL3 (60S ribosomal protein L3)