HL_8B2L_126

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

8B2L|1|h1|A|420

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_126 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.1214

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

8B2L|1|h1|OMC|418
8B2L|1|h1|C|419
8B2L|1|h1|A|420
8B2L|1|h1|A|421
8B2L|1|h1|G|422
8B2L|1|h1|G|423

Current chains

Chain h1

18S rRNA

Nearby chains

Chain e3

60S ribosomal protein L23

Chain k1

40S ribosomal protein S6