HL_8B2L_128
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUUGCAAUUGU(PSU)
- Length
- 12 nucleotides
- Bulged bases
- 8B2L|1|h1|U|1563, 8B2L|1|h1|U|1564, 8B2L|1|h1|G|1565
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_128 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.249
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8B2L|1|h1|A|1556
8B2L|1|h1|U|1557
8B2L|1|h1|U|1558
8B2L|1|h1|G|1559
8B2L|1|h1|C|1560
8B2L|1|h1|A|1561
8B2L|1|h1|A|1562
8B2L|1|h1|U|1563
8B2L|1|h1|U|1564
8B2L|1|h1|G|1565
8B2L|1|h1|U|1566
8B2L|1|h1|PSU|1567
Current chains
- Chain h1
- 18S rRNA
Nearby chains
- Chain E1
- 40S ribosomal protein S19-3
- Chain U1
- 40S ribosomal protein S18
- Chain V1
- 40S ribosomal protein S29
- Chain Y1
- 40S ribosomal protein S15-like
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