HL_8B5L_020
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B5L_020 not in the Motif Atlas
- Geometric match to HL_4LX6_002
- Geometric discrepancy: 0.3032
- The information below is about HL_4LX6_002
- Detailed Annotation
- Purine riboswitch
- Broad Annotation
- Purine riboswitch
- Motif group
- HL_46333.1
- Basepair signature
- cWW-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8B5L|1|5|C|1392
8B5L|1|5|C|1393
8B5L|1|5|U|1394
8B5L|1|5|U|1395
8B5L|1|5|C|1396
8B5L|1|5|C|1397
8B5L|1|5|A|1398
8B5L|1|5|G|1399
8B5L|1|5|U|1400
8B5L|1|5|C|1401
8B5L|1|5|C|1402
8B5L|1|5|G|1403
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain F
- 60S ribosomal protein L7
- Chain Q
- Ribosomal protein L18
- Chain b
- 60S ribosomal protein L29
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