HL_8B5L_025

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

8B5L|1|5|C|1631, 8B5L|1|5|C|1633, 8B5L|1|5|A|1634

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_025 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1421

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8B5L|1|5|C|1630
8B5L|1|5|C|1631
8B5L|1|5|PSU|1632
8B5L|1|5|C|1633
8B5L|1|5|A|1634
8B5L|1|5|G|1635

Current chains

Chain 5

28S rRNA

Nearby chains

Chain a

60S ribosomal protein L27a

Chain b

60S ribosomal protein L29

Chain o

60S ribosomal protein L36a-like