HL_8B5L_029
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- 8B5L|1|5|A|1830, 8B5L|1|5|A|1831
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B5L_029 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.1592
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8B5L|1|5|G|1825
8B5L|1|5|G|1826
8B5L|1|5|A|1827
8B5L|1|5|U|1828
8B5L|1|5|G|1829
8B5L|1|5|A|1830
8B5L|1|5|A|1831
8B5L|1|5|C|1832
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L7
- Chain e
- Ribosomal protein L32
- Chain f
- 60S ribosomal protein L35a
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