HL_8B5L_030

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8B5L|1|5|A|1923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_030 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2801

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8B5L|1|5|C|1917
8B5L|1|5|A|1918
8B5L|1|5|U|1919
8B5L|1|5|G|1920
8B5L|1|5|G|1921
8B5L|1|5|A|1922
8B5L|1|5|A|1923
8B5L|1|5|G|1924
8B5L|1|5|U|1925
8B5L|1|5|C|1926
8B5L|1|5|G|1927

Current chains

Chain 5

28S rRNA

Nearby chains