HL_8B5L_042

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_042 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.3168

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8B5L|1|5|G|2507
8B5L|1|5|U|2508
8B5L|1|5|U|2509
8B5L|1|5|C|2510
8B5L|1|5|G|2511
8B5L|1|5|C|2512
8B5L|1|5|C|2513

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain p

60S ribosomal protein L37a