HL_8B5L_061
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UUCAG(OMU)ACG
- Length
- 9 nucleotides
- Bulged bases
- 8B5L|1|5|A|4050
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B5L_061 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.2158
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8B5L|1|5|U|4047
8B5L|1|5|U|4048
8B5L|1|5|C|4049
8B5L|1|5|A|4050
8B5L|1|5|G|4051
8B5L|1|5|OMU|4052
8B5L|1|5|A|4053
8B5L|1|5|C|4054
8B5L|1|5|G|4055
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Q
- Ribosomal protein L18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- 60S ribosomal protein L36a-like
Coloring options: