HL_8B5L_084
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B5L_084 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1389
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8B5L|1|7|A|32
8B5L|1|7|U|33
8B5L|1|7|C|34
8B5L|1|7|U|35
8B5L|1|7|C|36
8B5L|1|7|G|37
8B5L|1|7|U|38
8B5L|1|7|C|39
8B5L|1|7|U|40
8B5L|1|7|G|41
8B5L|1|7|A|42
8B5L|1|7|U|43
8B5L|1|7|C|44
8B5L|1|7|U|45
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain J
- 60S ribosomal protein L11
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