HL_8B6C_023

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

8B6C|1|5|U|1551, 8B6C|1|5|A|1555, 8B6C|1|5|A|1556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B6C_023 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0878

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8B6C|1|5|A|1548
8B6C|1|5|C|1549
8B6C|1|5|G|1550
8B6C|1|5|U|1551
8B6C|1|5|G|1552
8B6C|1|5|C|1553
8B6C|1|5|G|1554
8B6C|1|5|A|1555
8B6C|1|5|A|1556
8B6C|1|5|U|1557

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain P

60S ribosomal protein L17

Chain j

Ribosomal protein L37