HL_8B6C_050

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8B6C|1|5|A|3374, 8B6C|1|5|A|3375, 8B6C|1|5|U|3376, 8B6C|1|5|A|3380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B6C_050 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1575

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8B6C|1|5|U|3371
8B6C|1|5|U|3372
8B6C|1|5|U|3373
8B6C|1|5|A|3374
8B6C|1|5|A|3375
8B6C|1|5|U|3376
8B6C|1|5|U|3377
8B6C|1|5|A|3378
8B6C|1|5|A|3379
8B6C|1|5|A|3380
8B6C|1|5|A|3381

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain j

Ribosomal protein L37