HL_8B6C_053

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GUAAC(B8H)A(PSU)GAC

Length

11 nucleotides

Bulged bases

8B6C|1|5|A|3492, 8B6C|1|5|C|3493, 8B6C|1|5|A|3495

QA status

Modified nucleotides: B8H, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B6C_053 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.5454

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8B6C|1|5|G|3489
8B6C|1|5|U|3490
8B6C|1|5|A|3491
8B6C|1|5|A|3492
8B6C|1|5|C|3493
8B6C|1|5|B8H|3494
8B6C|1|5|A|3495
8B6C|1|5|PSU|3496
8B6C|1|5|G|3497
8B6C|1|5|A|3498
8B6C|1|5|C|3499

Current chains

Chain 5

28S rRNA

Nearby chains