HL_8B6C_054

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8B6C|1|5|U|3534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B6C_054 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0602

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8B6C|1|5|U|3528
8B6C|1|5|C|3529
8B6C|1|5|U|3530
8B6C|1|5|A|3531
8B6C|1|5|A|3532
8B6C|1|5|U|3533
8B6C|1|5|U|3534
8B6C|1|5|A|3535
8B6C|1|5|G|3536

Current chains

Chain 5

28S rRNA

Nearby chains

Chain V

60S ribosomal protein L23