HL_8B6C_058
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8B6C|1|5|A|3960, 8B6C|1|5|C|3967
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B6C_058 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.1331
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
8B6C|1|5|U|3956
8B6C|1|5|C|3957
8B6C|1|5|A|3958
8B6C|1|5|A|3959
8B6C|1|5|A|3960
8B6C|1|5|C|3961
8B6C|1|5|G|3962
8B6C|1|5|G|3963
8B6C|1|5|U|3964
8B6C|1|5|A|3965
8B6C|1|5|A|3966
8B6C|1|5|C|3967
8B6C|1|5|G|3968
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- Ribosomal protein L10
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
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