HL_8B6C_065

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8B6C|1|5|G|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B6C_065 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.0851

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8B6C|1|5|A|4220
8B6C|1|5|G|4221
8B6C|1|5|C|4222
8B6C|1|5|A|4223
8B6C|1|5|G|4224
8B6C|1|5|A|4225
8B6C|1|5|A|4226
8B6C|1|5|U|4227

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain m

60S ribosomal protein L40