HL_8B6C_079

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

8B6C|1|8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B6C_079 not in the Motif Atlas

Geometric match to HL_2D6F_005

Geometric discrepancy: 0.3434

The information below is about HL_2D6F_005

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8B6C|1|8|G|121
8B6C|1|8|G|122
8B6C|1|8|U|123
8B6C|1|8|U|124
8B6C|1|8|C|125
8B6C|1|8|C|126
8B6C|1|8|U|127
8B6C|1|8|C|128
8B6C|1|8|C|129

Current chains

Chain 8

5.8S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain X

Ribosomal_L23eN domain-containing protein