3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
8BF7|1|2|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BF7_086 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.1226
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8BF7|1|2|G|786
8BF7|1|2|A|787
8BF7|1|2|U|788
8BF7|1|2|U|789
8BF7|1|2|A|790
8BF7|1|2|G|791
8BF7|1|2|A|792
8BF7|1|2|U|793
8BF7|1|2|A|794
8BF7|1|2|C|795
8BF7|1|2|C|796

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain 0
Large subunit ribosomal RNA; LSU rRNA
Chain 3
mRNA
Chain 4
Transfer RNA; tRNA
Chain o
30S ribosomal protein S11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1327 s
Application loaded.