HL_8BGE_012

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8BGE|1|0|G|386, 8BGE|1|0|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGE_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1317

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8BGE|1|0|A|382
8BGE|1|0|C|383
8BGE|1|0|A|384
8BGE|1|0|C|385
8BGE|1|0|G|386
8BGE|1|0|U|387
8BGE|1|0|G|388
8BGE|1|0|G|389
8BGE|1|0|U|390
8BGE|1|0|A|391
8BGE|1|0|U|392

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain U

50S ribosomal protein L28