HL_8BGH_090

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

8BGH|1|2|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_090 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.2007

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BGH|1|2|G|963
8BGH|1|2|A|964
8BGH|1|2|U|965
8BGH|1|2|G|966
8BGH|1|2|C|967
8BGH|1|2|A|968
8BGH|1|2|A|969
8BGH|1|2|C|970
8BGH|1|2|G|971
8BGH|1|2|C|972

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain m

30S ribosomal protein S9

Chain n

30S ribosomal protein S10