HL_8BH4_091

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UUCAGAGAUG

Length

10 nucleotides

Bulged bases

8BH4|1|2|A|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH4_091 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3116

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8BH4|1|2|U|1009
8BH4|1|2|U|1010
8BH4|1|2|C|1011
8BH4|1|2|A|1012
8BH4|1|2|G|1013
8BH4|1|2|A|1014
8BH4|1|2|G|1015
8BH4|1|2|A|1016
8BH4|1|2|U|1017
8BH4|1|2|G|1018

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain r

30S ribosomal protein S14

Chain w

30S ribosomal protein S19