HL_8BH7_006

3D structure

PDB id

8BH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

4.23 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8BH7|1|a|G|274

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH7_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.3543

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8BH7|1|a|G|267
8BH7|1|a|G|268
8BH7|1|a|U|269
8BH7|1|a|A|270
8BH7|1|a|A|271
8BH7|1|a|C|272
8BH7|1|a|G|273
8BH7|1|a|G|274
8BH7|1|a|C|275

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20