HL_8BHF_007
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCGGCG
- Length
- 7 nucleotides
- Bulged bases
- 8BHF|1|A2|G|134, 8BHF|1|A2|G|135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_007 not in the Motif Atlas
- Geometric match to HL_8VTW_010
- Geometric discrepancy: 0.0972
- The information below is about HL_8VTW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
8BHF|1|A2|C|131
8BHF|1|A2|G|132
8BHF|1|A2|C|133
8BHF|1|A2|G|134
8BHF|1|A2|G|135
8BHF|1|A2|C|136
8BHF|1|A2|G|137
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Ribosomal protein L15
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain U1
- 60S ribosomal protein L35
- Chain W1
- Ribosomal protein L37
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