HL_8BHF_027

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8BHF|1|A2|C|1676, 8BHF|1|A2|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_027 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1199

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8BHF|1|A2|C|1675
8BHF|1|A2|C|1676
8BHF|1|A2|U|1677
8BHF|1|A2|C|1678
8BHF|1|A2|A|1679
8BHF|1|A2|G|1680

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain N1

60S ribosomal protein L27a

Chain O1

60S ribosomal protein L29

Chain b1

Ribosomal protein L36a like