HL_8BHF_064
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUCAGUACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_064 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.2269
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8BHF|1|A2|U|4287
8BHF|1|A2|U|4288
8BHF|1|A2|C|4289
8BHF|1|A2|A|4290
8BHF|1|A2|G|4291
8BHF|1|A2|U|4292
8BHF|1|A2|A|4293
8BHF|1|A2|C|4294
8BHF|1|A2|G|4295
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain D1
- Ribosomal protein L18
- Chain G1
- 60S ribosomal protein L21
- Chain N1
- 60S ribosomal protein L27a
- Chain b1
- Ribosomal protein L36a like
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