HL_8BHF_066
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUGGGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 8BHF|1|A2|U|4340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_066 not in the Motif Atlas
- Geometric match to HL_4V83_139
- Geometric discrepancy: 0.3043
- The information below is about HL_4V83_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53597.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
8BHF|1|A2|U|4338
8BHF|1|A2|U|4339
8BHF|1|A2|U|4340
8BHF|1|A2|G|4341
8BHF|1|A2|G|4342
8BHF|1|A2|G|4343
8BHF|1|A2|U|4344
8BHF|1|A2|U|4345
8BHF|1|A2|U|4346
8BHF|1|A2|U|4347
8BHF|1|A2|A|4348
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain N1
- 60S ribosomal protein L27a
- Chain V1
- 60S ribosomal protein L36
- Chain b1
- Ribosomal protein L36a like
- Chain t3
- 60S ribosomal protein L13
Coloring options: