HL_8BHF_067

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_067 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1792

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BHF|1|A2|C|4403
8BHF|1|A2|G|4404
8BHF|1|A2|U|4405
8BHF|1|A2|U|4406
8BHF|1|A2|C|4407
8BHF|1|A2|A|4408
8BHF|1|A2|U|4409
8BHF|1|A2|A|4410
8BHF|1|A2|G|4411

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Z1

Ubiquitin-60S ribosomal protein L40

Chain r3

Ribosomal protein L10