HL_8BHF_080

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8BHF|1|A3|U|160, 8BHF|1|A3|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_080 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1905

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BHF|1|A3|G|156
8BHF|1|A3|U|157
8BHF|1|A3|A|158
8BHF|1|A3|A|159
8BHF|1|A3|U|160
8BHF|1|A3|U|161
8BHF|1|A3|C|162

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain H3

40S ribosomal protein S6

Chain Z3

40S ribosomal protein S24