HL_8BHF_083

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG

Length

3 nucleotides

Bulged bases

8BHF|1|A3|C|323

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_083 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2801

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8BHF|1|A3|C|322
8BHF|1|A3|C|323
8BHF|1|A3|G|329

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain H3

40S ribosomal protein S6

Chain J1

TRASH domain-containing protein