HL_8BHF_088

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_088 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3007

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8BHF|1|A3|C|498
8BHF|1|A3|G|499
8BHF|1|A3|A|500
8BHF|1|A3|C|501
8BHF|1|A3|C|502
8BHF|1|A3|C|503
8BHF|1|A3|G|504

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain F3

40S ribosomal protein S4

Chain Z3

40S ribosomal protein S24