HL_8BHF_099

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCCCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_099 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3506

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

8BHF|1|A3|U|1114
8BHF|1|A3|U|1115
8BHF|1|A3|C|1116
8BHF|1|A3|C|1117
8BHF|1|A3|C|1118
8BHF|1|A3|A|1119

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain C3

40S ribosomal protein S3a

Chain c3

40S ribosomal protein S27