HL_8BHF_106

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCG

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_106 not in the Motif Atlas

Geometric match to HL_8VTW_010

Geometric discrepancy: 0.1591

The information below is about HL_8VTW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8BHF|1|A3|C|1416
8BHF|1|A3|C|1417
8BHF|1|A3|C|1423
8BHF|1|A3|G|1424

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain R3

Ribosomal protein S16

Chain U3

40S ribosomal protein S19