HL_8BHF_108

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BHF_108 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.1904

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8BHF|1|A3|C|1565
8BHF|1|A3|G|1566
8BHF|1|A3|G|1567
8BHF|1|A3|C|1568
8BHF|1|A3|A|1569
8BHF|1|A3|G|1570

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain Q3

40S ribosomal protein S15

Chain T3

40S ribosomal protein S18

Chain U3

40S ribosomal protein S19