HL_8BHF_120
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BHF_120 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1452
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8BHF|1|B2|A|32
8BHF|1|B2|U|33
8BHF|1|B2|C|34
8BHF|1|B2|U|35
8BHF|1|B2|C|36
8BHF|1|B2|G|37
8BHF|1|B2|U|38
8BHF|1|B2|C|39
8BHF|1|B2|U|40
8BHF|1|B2|G|41
8BHF|1|B2|A|42
8BHF|1|B2|U|43
8BHF|1|B2|C|44
8BHF|1|B2|U|45
Current chains
- Chain B2
- 5S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain m3
- 60S ribosomal protein L5
- Chain s3
- 60S ribosomal protein L11
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