HL_8BIL_005

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIL_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1244

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BIL|1|0|U|158
8BIL|1|0|G|159
8BIL|1|0|A|160
8BIL|1|0|A|161
8BIL|1|0|U|162
8BIL|1|0|C|163
8BIL|1|0|C|164
8BIL|1|0|A|165
8BIL|1|0|U|166
8BIL|1|0|A|167
8BIL|1|0|G|168

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain U

50S ribosomal protein L28