HL_8BIM_012

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8BIM|1|0|G|386, 8BIM|1|0|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIM_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1211

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8BIM|1|0|A|382
8BIM|1|0|C|383
8BIM|1|0|A|384
8BIM|1|0|C|385
8BIM|1|0|G|386
8BIM|1|0|U|387
8BIM|1|0|G|388
8BIM|1|0|G|389
8BIM|1|0|U|390
8BIM|1|0|A|391
8BIM|1|0|U|392

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain U

50S ribosomal protein L28