HL_8BIM_016

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

8BIM|1|0|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BIM_016 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.3792

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8BIM|1|0|G|543
8BIM|1|0|C|544
8BIM|1|0|U|545
8BIM|1|0|U|546
8BIM|1|0|A|547
8BIM|1|0|G|548
8BIM|1|0|G|549
8BIM|1|0|C|550

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain G

50S ribosomal protein L13