HL_8BJQ_020

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8BJQ|1|1|U|879, 8BJQ|1|1|A|883, 8BJQ|1|1|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BJQ_020 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1061

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8BJQ|1|1|A|876
8BJQ|1|1|C|877
8BJQ|1|1|G|878
8BJQ|1|1|U|879
8BJQ|1|1|G|880
8BJQ|1|1|C|881
8BJQ|1|1|A|882
8BJQ|1|1|A|883
8BJQ|1|1|A|884
8BJQ|1|1|U|885

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17-A

Chain Lj

60S ribosomal protein L37-A