HL_8BJQ_062

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8BJQ|1|1|U|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BJQ_062 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1297

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8BJQ|1|1|C|2840
8BJQ|1|1|G|2841
8BJQ|1|1|U|2842
8BJQ|1|1|U|2843
8BJQ|1|1|C|2844
8BJQ|1|1|A|2845
8BJQ|1|1|U|2846
8BJQ|1|1|A|2847
8BJQ|1|1|G|2848

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lm

60S ribosomal protein L40-A